PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37093_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 334aa    MW: 37663.6 Da    PI: 8.5863
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37093_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.6e-36251172103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+++++++sw e+ +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  e+         weF+++
  Cotton_A_37093_BGI-A2_v1.0  25 FLTKTYQLVDDPTTDHIVSWGEDDTSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANE 98 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                  Fkkg k+ll++i+r+k++
  Cotton_A_37093_BGI-A2_v1.0  99 FFKKGGKHLLCEIHRRKTT 117
                                 ****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.07E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.2E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MALMVDNCEG VLLSLEPHKA VPAPFLTKTY QLVDDPTTDH IVSWGEDDTS FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP ERWEFANEFF KKGGKHLLCE IHRRKTTQPS  120
INHHYHPHIP HSALNAPSFF PFPTQVSISP TDMDDSPPLS SPRGATGGYG SSVTALSEDN  180
ERLRRSNSLL MSELTHMRKL YSDIIYFVQN HVKSITPSNS YSPSWLHSGP PPAVNTNTSL  240
LQKPLNQLLG YYPKSPNPQF QGLNSPTATS QSSLTIVEEP SSNSCKTRLF GVPLHSKKRL  300
HPEYSTAANM ETSKARLILE KDDLRLNLMP SSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D3e-221011611131Heat shock factor protein 1
5d5v_B3e-221011611131Heat shock factor protein 1
5d5u_B3e-221011611131Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6839100.0KJ683910.1 Gossypium hirsutum heat shock transcription factor (HSF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466618.10.0PREDICTED: heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6351e-116HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A076JZL20.0A0A076JZL2_G
STRINGPOPTR_0002s12640.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-118heat shock transcription factor B4